Apple Crisp Mini Cheesecakes: Sweet Autumn Bites

Featured in Zucchini Breads & Desserts.

Apple Crisp Mini Cheesecakes combine creamy cheesecake with spiced apples and a crunchy topping. These sweet autumn bites are perfect for any gathering.
Clara Rodriguez - Recipe Author
Updated on Sun Jan 11 2026 at 02:23 AM
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Remember those autumn afternoons, the ones where the air just smells like cinnamon and falling leaves? That’s when I first stumbled upon the idea for these Apple Crisp Mini Cheesecakes. I was trying to recreate a giant apple crisp, but my pan decided to rebel, overflowing all over my oven. Total chaos, honestly! But as I cleaned up, I thought, "What if I could capture all that spiced apple goodness and that crunchy topping, but in a neat, creamy little package?" That’s how these tiny treats were born. They’re everything you love about fall desserts, but in a perfectly portioned bite, making them special and comforting without the usual kitchen drama.

One time, I got so excited about the apple topping, I added way too much cinnamon like, a whole extra teaspoon. My kitchen smelled incredible, but the first bite was a fiery surprise! My partner just looked at me, eyes watering, and said, "A bold choice, honey." I still laugh thinking about it. Now, I stick to the recipe, but it taught me that even a little extra spice can change everything. Oops!

Apple Crisp Mini Cheesecakes: Ingredients

  • Graham Cracker Crumbs: These form the sturdy, slightly sweet base for our Apple Crisp Mini Cheesecakes. I've tried other cookies, but graham crackers just give that classic, comforting crust vibe. Don't skimp on fresh crumbs!
  • Unsalted Butter (melted): Helps bind that crust together, giving it a beautiful, golden hue and rich flavor. Honestly, I once used salted butter by mistake, and the crust was… interesting. Stick to unsalted for these Apple Crisp Mini Cheesecakes.
  • Granulated Sugar: A touch in the crust and in the creamy filling. It balances the tang of the cream cheese and makes the apples wonderfully sweet. Don't go crazy, we're not making rock candy here!
  • Cream Cheese (full-fat, softened): The star of our creamy filling! Full-fat is essential here, don't even think about light cream cheese unless you want a runny, sad cheesecake. Let it sit out, friends, softened cream cheese makes for the smoothest filling, I swear.
  • Large Egg: Binds the cheesecake, giving it that classic smooth texture. I've forgotten an egg once, and the filling was more like a sweet scramble not pretty, not at all.
  • Vanilla Extract: Just a splash, but it makes all the difference, enhancing all those lovely sweet flavors. I use a good quality one, you really can taste the difference here.
  • Sour Cream: This is my secret weapon for a truly creamy, slightly tangy cheesecake. It adds a richness and helps prevent cracks. I didn't expect it to work so well the first time I tried it, but it's a game-changer for these Apple Crisp Mini Cheesecakes.
  • Apples (firm, tart like Granny Smith): The heart of the "apple crisp" part! I prefer Granny Smiths because they hold their shape and their tartness cuts through the sweetness. I've tried softer apples, and they just turn to mush, which is a disaster, trust me.
  • Brown Sugar (light): For the apples and the crisp topping, it adds a deep, molasses-y sweetness that just screams autumn. I always keep a bag on hand, it's my go-to for anything fall-flavored.
  • Ground Cinnamon & Nutmeg: The dynamic duo for that warm, spiced apple flavor. Freshly grated nutmeg? Oh yes, it makes a world of difference. I always sprinkle a little extra, because, well, cinnamon!
  • Lemon Juice: A little squeeze keeps the apples from browning and brightens their flavor. It’s like a little secret handshake for the apples.
  • Cornstarch: Thickens the apple filling just enough so it's not watery. I once skipped it, and my apples were swimming oops!
  • Rolled Oats: The base for our crunchy crisp topping. Not instant oats, please! You want that texture.
  • All-Purpose Flour: Helps bind the crisp topping and gives it that lovely crumbly texture.

Apple Crisp Mini Cheesecakes: Instructions

Crafting the Crust:
First things first, let's get those muffin tins ready! Line a 12-cup muffin tin with paper liners. Now, in a medium bowl, combine your graham cracker crumbs, a spoonful of granulated sugar, and that melted butter. Stir it all together until it looks like wet sand. I usually use my hands here, it just feels right. Press about a tablespoon of this mixture firmly into the bottom of each lined muffin cup. Don't be shy with the pressing, you want a good, solid base for our Apple Crisp Mini Cheesecakes. Pop that tray into the fridge while you work on the next steps.
The Creamy Filling:
Time for the good stuff! In a large bowl, using an electric mixer, beat your softened cream cheese and the remaining granulated sugar together until it’s smooth and creamy, no lumps allowed! I once didn't soften my cream cheese enough, and my arm got a workout, plus the filling was a bit chunky not ideal. Scrape down the sides of the bowl often. Then, beat in the egg until just combined, followed by the vanilla extract and sour cream. Mix on low speed until everything is just incorporated. Overmixing eggs can lead to cracks, and we don't want those! This is where the magic starts for your Apple Crisp Mini Cheesecakes.
Spiced Apple Topping:
Now for the apple magic! In a small saucepan, melt a tablespoon of butter over medium heat. Add your diced apples, brown sugar, cinnamon, nutmeg, and a splash of lemon juice. Stir it all together and cook for about 5-7 minutes, until the apples start to soften but still have a little bite. This step makes your kitchen smell absolutely divine, like a crisp autumn day! In a tiny bowl, whisk the cornstarch with a tablespoon of water to make a slurry, then stir it into the apples. Cook for another minute until the mixture thickens slightly. Let it cool a bit before we use it on our Apple Crisp Mini Cheesecakes.
Crispy Crumb Perfection:
While the apples cool, let's make that irresistible crisp topping. In another medium bowl, combine the rolled oats, all-purpose flour, brown sugar, and a pinch more cinnamon. Now, cut in your cold butter. You can use a pastry blender, two knives, or honestly, your fingertips just work quickly so the butter doesn't melt too much. You want crumbly bits, like coarse meal. This topping is what gives the "crisp" in Apple Crisp Mini Cheesecakes, so don't skip it! I always make sure I have a good mix of small and slightly larger crumbs.
Assembly & Bake:
Grab that muffin tin from the fridge. Spoon the cream cheese filling over the crusts, filling each cup about two-thirds full. Next, spoon a generous dollop of your cooled spiced apple mixture over the cheesecake filling in each cup. Finally, sprinkle that glorious crisp topping over the apples. I always pile it on a bit, because who doesn't love extra crunch? Bake for 20-25 minutes, or until the edges are set and the centers have just a slight wobble. My oven is a bit finicky, so I always keep an eye on them around the 20-minute mark to prevent over-baking these delicate Apple Crisp Mini Cheesecakes.
Chilling & Serving:
The hardest part: waiting! Let the Apple Crisp Mini Cheesecakes cool completely in the muffin tin on a wire rack. Once they're at room temperature, transfer the whole tin to the refrigerator and chill for at least 4 hours, or even better, overnight. This chilling time is crucial for them to firm up properly and develop their full flavor. Trust me, I've tried to rush it, and they just weren't the same. Once chilled, gently lift them out by the paper liners. They should look beautiful, smell fantastic, and taste like pure autumn happiness!

I remember making these Apple Crisp Mini Cheesecakes for a potluck once, and I totally underestimated how popular they'd be. I only made one batch, thinking they were just a "little something." They vanished in minutes! My friends were practically fighting over the last one. It was a chaotic, but sweet, reminder that sometimes the simplest, most comforting desserts are the biggest hits.

Apple Crisp Mini Cheesecakes: Storage Tips

So, you've made a batch of these glorious Apple Crisp Mini Cheesecakes and somehow, there are leftovers! Good for you. My best advice for keeping them fresh is to store them in an airtight container in the refrigerator. I've tried just covering the muffin tin with plastic wrap, but the crisp topping loses its crunch much faster that way. They'll stay wonderfully fresh for up to 3-4 days. I wouldn't recommend freezing them, honestly. I tried it once, and while edible, the texture of both the cheesecake and the crisp topping just wasn't the same after thawing it got a bit watery and soggy. Best enjoyed fresh and chilled from the fridge! If you want to prep ahead, you can make the apple topping a day in advance and store it in the fridge, then assemble and bake the next day.

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Apple Crisp Mini Cheesecakes: Ingredient Swaps

Life happens, and sometimes you just don't have exactly what the recipe calls for. For the crust, if you're out of graham crackers, digestive biscuits or even vanilla wafers can work in a pinch, though the flavor profile will shift a bit I tried vanilla wafers once, and it was a sweeter, less "graham-y" vibe, but still good! For the apples, feel free to use a mix of your favorites, Honeycrisp or Fuji can add more sweetness, just be mindful they might soften faster than Granny Smiths. I even tried a pear/apple mix once, and it was surprisingly delicious! If you don't have sour cream, plain Greek yogurt (full-fat!) can be a decent substitute in the cheesecake filling, adding that necessary tang and richness. Just make sure it's thick. For the crisp topping, if you're gluten-free, you can swap the all-purpose flour for a 1:1 gluten-free baking blend and ensure your oats are certified GF. Experimentation is half the fun with these Apple Crisp Mini Cheesecakes!

Apple Crisp Mini Cheesecakes: Serving Ideas

These Apple Crisp Mini Cheesecakes are pretty perfect on their own, but a few little touches can make them extra special. I love serving them with a tiny dollop of freshly whipped cream or a small scoop of vanilla bean ice cream that slowly melts into the spiced apples pure heaven! A drizzle of salted caramel sauce over the top? Oh yes, that’s always a winner and brings out even more of those autumn flavors. For drinks, a warm mug of spiced cider or a robust cup of coffee pairs wonderfully, especially on a chilly evening. For me, these mini cheesecakes and a good book by the fireplace make for a perfectly cozy night in. They’re also fantastic for holiday gatherings or just as a sweet ending to a comforting Sunday dinner.

Apple Crisp Mini Cheesecakes: A Sweet History

While these Apple Crisp Mini Cheesecakes are my own invention, they stand on the shoulders of two beloved desserts: the classic American apple crisp and the rich, creamy cheesecake. Apple crisp, a humble dessert often made when fresh fruit was abundant, gained popularity during wartime when pie crust ingredients were scarce. It’s all about those tender, spiced apples and a buttery, crumbly oat topping pure comfort. Cheesecake, on the other hand, has roots stretching back to ancient Greece, evolving into the creamy, decadent treat we know today, especially popularized in New York. My personal connection came from trying to merge these two favorites. I grew up with my grandmother's amazing apple crisps every fall, and cheesecake was always the special occasion dessert. Combining them felt like bringing two cherished parts of my food memory together, creating something new yet deeply familiar and comforting for my family.

Honestly, these Apple Crisp Mini Cheesecakes have become a favorite in my kitchen. They’re a little bit of autumn sunshine, a creamy hug, and a crunchy delight all rolled into one. Every time I pull a batch from the oven, the smell alone makes me smile. I love that they bring together so many comforting flavors in such a neat, happy package. I really hope you give them a try and make them your own. Let me know how your batch turns out!

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Frequently Asked Questions

→ Can I make Apple Crisp Mini Cheesecakes ahead of time?

Absolutely! These Apple Crisp Mini Cheesecakes are fantastic for making ahead. I often whip them up the day before I need them. The flavors actually meld even better overnight in the fridge. Just make sure they're properly chilled before serving!

→ What kind of apples are best for Apple Crisp Mini Cheesecakes?

I always reach for firm, tart apples like Granny Smith. They hold their shape well during cooking and their tartness balances the sweetness of the cheesecake and crisp topping beautifully. I once used Gala, and they just turned to mush oops!

→ Why did my Apple Crisp Mini Cheesecakes crack on top?

Cracks can happen, don't worry! Often it's from overmixing the batter or baking them at too high a temperature, or cooling them too quickly. I usually try to avoid opening the oven door too much and let them cool slowly to prevent drastic temperature changes.

→ Can I freeze leftover Apple Crisp Mini Cheesecakes?

You can, but I wouldn't highly recommend it for the best texture. I tried freezing them once, and while they were edible, the crisp topping softened, and the cheesecake became a bit watery upon thawing. Best enjoyed fresh from the fridge within a few days.

→ How can I make these Apple Crisp Mini Cheesecakes gluten-free?

To make them gluten-free, swap out the graham cracker crumbs for gluten-free graham crackers or a similar GF cookie. For the crisp topping, use a 1:1 gluten-free all-purpose flour blend and ensure your rolled oats are certified gluten-free. I've had success with these swaps!

Apple Crisp Mini Cheesecakes: Sweet Autumn Bites

Apple Crisp Mini Cheesecakes combine creamy cheesecake with spiced apples and a crunchy topping. These sweet autumn bites are perfect for any gathering.

4.8 out of 5
(80 reviews)
Prep Time
30 Minutes
Cook Time
25 Minutes
Total Time
55 Minutes


Difficulty: Intermediate

Cuisine: American

Yield: 12 Servings

Dietary: Vegetarian

Published: Mon Dec 15 2025 at 04:27 PM

Last Updated: Sun Jan 11 2026 at 02:23 AM

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Ingredients

→ Crust Ingredients

01 1 ½ cups graham cracker crumbs (about 10-12 full graham crackers)
02 ¼ cup granulated sugar
03 6 tbsp unsalted butter, melted

→ Cheesecake Filling

04 16 oz (two 8-oz blocks) full-fat cream cheese, softened
05 ½ cup granulated sugar
06 1 large egg
07 1 tsp vanilla extract
08 ¼ cup sour cream

→ Spiced Apple Topping

09 2 medium firm, tart apples (like Granny Smith), peeled, cored, and diced small
10 2 tbsp light brown sugar
11 ½ tsp ground cinnamon
12 ¼ tsp ground nutmeg
13 1 tbsp lemon juice
14 1 tbsp unsalted butter
15 1 tsp cornstarch mixed with 1 tbsp cold water (slurry)

→ Crisp Topping

16 ½ cup rolled oats (not instant)
17 ¼ cup all-purpose flour
18 ¼ cup light brown sugar
19 ¼ tsp ground cinnamon
20 3 tbsp cold unsalted butter, cut into small pieces

Instructions

Step 01

First things first, let's get those muffin tins ready! Line a 12-cup muffin tin with paper liners. Now, in a medium bowl, combine your graham cracker crumbs, a spoonful of granulated sugar, and that melted butter. Stir it all together until it looks like wet sand. I usually use my hands here, it just feels right. Press about a tablespoon of this mixture firmly into the bottom of each lined muffin cup. Don't be shy with the pressing, you want a good, solid base for our Apple Crisp Mini Cheesecakes. Pop that tray into the fridge while you work on the next steps.

Step 02

Time for the good stuff! In a large bowl, using an electric mixer, beat your softened cream cheese and the remaining granulated sugar together until it’s smooth and creamy, no lumps allowed! I once didn't soften my cream cheese enough, and my arm got a workout, plus the filling was a bit chunky – not ideal. Scrape down the sides of the bowl often. Then, beat in the egg until just combined, followed by the vanilla extract and sour cream. Mix on low speed until everything is just incorporated. Overmixing eggs can lead to cracks, and we don't want those! This is where the magic starts for your Apple Crisp Mini Cheesecakes.

Step 03

Now for the apple magic! In a small saucepan, melt a tablespoon of butter over medium heat. Add your diced apples, brown sugar, cinnamon, nutmeg, and a splash of lemon juice. Stir it all together and cook for about 5-7 minutes, until the apples start to soften but still have a little bite. This step makes your kitchen smell absolutely divine, like a crisp autumn day! In a tiny bowl, whisk the cornstarch with a tablespoon of water to make a slurry, then stir it into the apples. Cook for another minute until the mixture thickens slightly. Let it cool a bit before we use it on our Apple Crisp Mini Cheesecakes.

Step 04

While the apples cool, let's make that irresistible crisp topping. In another medium bowl, combine the rolled oats, all-purpose flour, brown sugar, and a pinch more cinnamon. Now, cut in your cold butter. You can use a pastry blender, two knives, or honestly, your fingertips – just work quickly so the butter doesn't melt too much. You want crumbly bits, like coarse meal. This topping is what gives the "crisp" in Apple Crisp Mini Cheesecakes, so don't skip it! I always make sure I have a good mix of small and slightly larger crumbs.

Step 05

Grab that muffin tin from the fridge. Spoon the cream cheese filling over the crusts, filling each cup about two-thirds full. Next, spoon a generous dollop of your cooled spiced apple mixture over the cheesecake filling in each cup. Finally, sprinkle that glorious crisp topping over the apples. I always pile it on a bit, because who doesn't love extra crunch? Bake for 20-25 minutes, or until the edges are set and the centers have just a slight wobble. My oven is a bit finicky, so I always keep an eye on them around the 20-minute mark to prevent over-baking these delicate Apple Crisp Mini Cheesecakes.

Step 06

The hardest part: waiting! Let the Apple Crisp Mini Cheesecakes cool completely in the muffin tin on a wire rack. Once they're at room temperature, transfer the whole tin to the refrigerator and chill for at least 4 hours, or even better, overnight. This chilling time is crucial for them to firm up properly and develop their full flavor. Trust me, I've tried to rush it, and they just weren't the same. Once chilled, gently lift them out by the paper liners. They should look beautiful, smell fantastic, and taste like pure autumn happiness!

Notes

  1. Always use full-fat cream cheese and let it soften completely, it makes all the difference in texture, a lesson I learned the hard way.
  2. Store leftovers in an airtight container in the refrigerator for up to 3-4 days to keep the crisp topping crunchy.
  3. Plain full-fat Greek yogurt can substitute sour cream in the cheesecake filling for a similar tang and richness.
  4. A tiny sprinkle of flaky sea salt on top of the crisp topping just before serving enhances all the sweet and spiced notes beautifully.

Tools You'll Need

  • 12-cup muffin tin
  • paper liners
  • large mixing bowls
  • electric hand mixer
  • small saucepan
  • wire rack

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Dairy
  • Gluten
  • Eggs

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 350
  • Total Fat: 22g
  • Total Carbohydrate: 35g
  • Protein: 5g

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