Rustic Apple Crumble Cupcakes: Fall Spiced Treats

Featured in Zucchini Breads & Desserts.

Apple Crumble Cupcakes bring the comforting taste of fall to your kitchen. Warm spices, tender apples, and a crumbly topping make these a sweet, easy treat.
Sarah Jenkins - Recipe Author
Updated on Thu Jan 08 2026 at 02:50 AM
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I still remember the first time I truly fell for Apple Crumble Cupcakes. It wasn't some fancy bakery, oh no. It was a rainy Saturday, years ago, and I was trying to recreate a vague memory of a friend's grandmother's apple pie. Well, I messed up the pie crust, like, spectacularly. Total disaster. But I had all these apples and cinnamon, and a moment of pure kitchen chaos led me to think, "What if... cupcakes?" The whole apartment smelled like warm apples and spices, a hug in the air, and even though they weren't perfect, they were special. That day, these Apple Crumble Cupcakes became my comforting fall ritual, a reminder that even kitchen blunders can lead to something unexpectedly wonderful.

One time, I got a little too ambitious with the apple filling, thinking "more apples, more flavor, right?" Wrong. My cupcakes overflowed in the oven, creating this sticky, caramelized mess all over the pan. It smelled amazing, sure, but cleaning it? Not so much. Took me ages. So, trust me on the apple quantity here. A little restraint goes a long way for perfectly baked Apple Crumble Cupcakes, no sticky situations.

Apple Crumble Cupcakes: Ingredients

  • All-Purpose Flour: This is our base, the backbone of our cupcakes. I’ve tried whole wheat once, and it made them a bit too dense for my liking, so stick with the AP for that fluffy crumb.
  • Granulated Sugar: Sweetness, of course! You could try a mix of granulated and light brown sugar for a deeper molasses note, I’ve done that and it works pretty well, kinda. Just don't go overboard, especially with the sweet apples.
  • Baking Powder & Baking Soda: Our lift-off crew! These give the cupcakes their lovely rise. Freshness matters here, hon, old leavening agents mean flat, sad cupcakes.
  • Salt: Don't skip it! It balances all the sweetness and really makes the other flavors pop. I always forget it, then kick myself when I take the first bite.
  • Unsalted Butter: For richness in both the cupcakes and the crumble. Make sure it's softened for the cupcake batter and cold for the crumble. It makes a huge difference in texture.
  • Eggs: Binders and moisture providers. I always use large eggs, room temperature helps them incorporate better into the batter.
  • Milk: Adds moisture and helps with tenderness. I usually use whole milk, but whatever you have on hand should be fine, just not skim, please.
  • Vanilla Extract: Pure vanilla is worth it. It brings out all the other flavors beautifully. The smell of good vanilla makes my kitchen feel like a warm hug.
  • Apples (Granny Smith or Honeycrisp): The star of our Apple Crumble Cupcakes! Granny Smiths give a nice tartness, while Honeycrisps are sweeter. I usually mix them for balance.
  • Brown Sugar (light or dark): For that deep, caramel-like sweetness in the apple filling and the crumble. Dark brown sugar gives a richer flavor, but light works perfectly too.
  • Ground Cinnamon & Nutmeg: The quintessential fall spices! They transform simple apples into something magical. I always add a little extra cinnamon, because why not?
  • Oats (rolled or quick-cooking): The secret to that rustic, chewy crumble texture. I prefer rolled oats for more bite, but quick oats are fine.

Apple Crumble Cupcakes: Instructions

Prep Your Space & Apples:
First things first, get your oven preheating to 375°F (190°C) and line a 12-cup muffin tin with paper liners. Then, peel, core, and dice your apples into small, uniform pieces. I usually aim for about 1/4 to 1/2 inch cubes. This is where I always get a little messy, apple peels everywhere! Toss the diced apples in a medium bowl with 1 tablespoon of granulated sugar, 1 tablespoon of brown sugar, 1/2 teaspoon of cinnamon, and a pinch of nutmeg. Give it a good stir to coat them all. They’ll soften slightly while you work on the rest.
Whip Up the Crumble Topping:
In a separate small bowl, let’s make that glorious crumble. Combine 1/2 cup all-purpose flour, 1/4 cup rolled oats, 1/4 cup packed light brown sugar, 1/2 teaspoon ground cinnamon, and a tiny pinch of salt. Now, cut in 3 tablespoons of cold unsalted butter. You can use a pastry blender, two forks, or just your fingertips I usually go with my fingers because it's quicker and I like the feel. Work it until the mixture resembles coarse crumbs. Don't overmix, you want those little buttery bits for crunch! Set this aside for a bit.
Mix the Cupcake Batter:
In a large bowl, cream together 1/2 cup softened unsalted butter and 1/2 cup granulated sugar until light and fluffy. This is where the magic starts to happen, you can see it getting pale and airy! Beat in 2 large eggs, one at a time, making sure each is fully incorporated before adding the next. Don't worry if it looks a little curdled, it'll come together. Stir in 1 teaspoon of vanilla extract. In another bowl, whisk together 1 1/2 cups all-purpose flour, 1 1/2 teaspoons baking powder, 1/2 teaspoon baking soda, and 1/4 teaspoon salt. Add the dry ingredients to the wet ingredients in three additions, alternating with 1/2 cup milk, beginning and ending with the dry. Mix until just combined. Don't overmix, seriously! Lumps are okay.
Assemble Your Apple Crumble Cupcakes:
Divide about two-thirds of the cupcake batter evenly among the 12 lined muffin cups. Each cup will get a spoonful or two. Now, take your spiced apple mixture and spoon a generous tablespoon or so over the batter in each cup. You don’t need to be super neat, a little rustic charm is good! Gently press the apples down a bit into the batter. Then, dollop the remaining cupcake batter over the apples in each cup, spreading it carefully to cover. This creates a lovely apple layer in the middle. I sometimes get a bit messy here, but it’s fine, it bakes out!
Top with Crumble & Bake:
Finally, sprinkle your prepared crumble topping generously over each cupcake. Make sure every single one gets a good crown of that buttery, oat-y goodness. Don't be shy! Pop the muffin tin into your preheated oven. Bake for 18-22 minutes, or until a wooden skewer inserted into the center of a cupcake comes out clean, or with just a few moist crumbs. My oven runs hot, so I usually check at 18 minutes. The kitchen will smell absolutely incredible, like pure autumn heaven!
Cool & Enjoy Your Apple Crumble Cupcakes:
Once they’re golden brown and baked through, carefully remove the muffin tin from the oven. Let the Apple Crumble Cupcakes cool in the tin for about 5 minutes before transferring them to a wire rack to cool completely. The smell of warm apples and cinnamon wafting through the house is just the best. I always sneak one when it's still warm, even though I know I should wait. They look so inviting, with that golden crumble on top and the peek of apple inside. Enjoy!

Honestly, baking these Apple Crumble Cupcakes always feels a bit like magic. There's this one time I had my little niece helping me, and she was so proud sprinkling the crumble. She got more on the counter than on the cupcakes, but her giggle made it all worth it. It’s moments like those, the little chaotic joys in the kitchen, that make these treats more than just food, they’re memories, baked right in.

Storage Tips for Apple Crumble Cupcakes

So, you’ve got leftover Apple Crumble Cupcakes (if that’s even a thing in your house, haha!). I usually store them in an airtight container at room temperature. They stay wonderfully fresh and moist for about 2-3 days. If you pop them in the fridge, they’ll last a bit longer, maybe up to 5 days, but sometimes the crumble gets a little less crispy. I microwaved one once to warm it up, and the crumble got a bit soggy, which wasn't my favorite, so I usually just let them come to room temperature or give them a quick toast in a toaster oven if I want that crispness back. You can also freeze them! Just let them cool completely, then wrap each cupcake individually in plastic wrap and place them in a freezer-safe bag. They’ll keep for up to 3 months. Thaw at room temperature when you’re ready for a sweet treat.

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Apple Crumble Cupcakes: Ingredient Substitutions

Life happens, and sometimes you don’t have exactly what the recipe calls for. For the apples in these Apple Crumble Cupcakes, if you don't have Granny Smiths or Honeycrisps, Fuji or Gala apples work well too, just make sure they're firm baking apples. I tried using Red Delicious once, and they just turned to mush, so don't do that! If you're out of milk, buttermilk or even plain yogurt (thinned with a bit of water) can work in a pinch for the cupcake batter, it might give a slightly tangier flavor, but it's kinda good! For the crumble, if you're out of oats, you could skip them and just use more flour, but you'll lose that rustic texture. Also, if you only have salted butter, just omit the extra salt from both the cupcake batter and the crumble. I’ve done that many times when I'm in a rush, and it works out fine.

Serving Suggestions for Apple Crumble Cupcakes

Oh, the ways to enjoy these Apple Crumble Cupcakes! My absolute favorite way is slightly warm, with a big scoop of vanilla bean ice cream melting gloriously over the top. The contrast of warm cupcake and cold ice cream? Yes please! A drizzle of homemade caramel sauce or even a simple dusting of powdered sugar also works wonders. They’re fantastic with a strong cup of coffee in the morning (don't judge!), or a warm mug of apple cider on a crisp fall evening. Honestly, these and a good book on the couch feel like the ultimate cozy night in. For a casual gathering, arrange them on a pretty platter with a few extra apple slices and a sprinkle of cinnamon for a lovely presentation. They’re a crowd-pleaser, I swear!

Apple Crumble Cupcakes: Cultural Backstory

While Apple Crumble Cupcakes aren't exactly a centuries-old traditional dish, they're a fun, modern twist on two beloved classics: the humble cupcake and the comforting apple crumble. Apple crumble itself has roots in Britain, a wartime invention when pie crust ingredients were scarce, making a simple, buttery oat topping a brilliant alternative. The cupcake, of course, is an American invention, a convenient, single-serving cake that became wildly popular. For me, combining these two felt like a natural evolution, bringing together that rustic, homestyle feel of a crumble with the playful ease of a cupcake. It’s a testament to how recipes evolve, adapt, and become personal favorites across cultures and kitchens. These Apple Crumble Cupcakes carry that cozy, comforting spirit, no matter where you are.

And there you have it, friends. My beloved Apple Crumble Cupcakes, straight from my sometimes-chaotic kitchen to yours. They’re not just a dessert, they’re a little piece of fall, a little bit of comfort, and a whole lot of love. Seeing that golden crumble against the tender cupcake, smelling the cinnamon… it just makes my heart happy. I really hope you give these a try and make them your own. Don’t forget to tell me how your Apple Crumble Cupcakes turn out!

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Frequently Asked Questions

→ Can I use frozen apples for these Apple Crumble Cupcakes?

You can, but I’d recommend thawing them first and draining any excess liquid really well. Otherwise, they might make your cupcakes too watery and dense. I tried it once, and they were a bit soggy, so fresh is always my pick if possible!

→ What if I don't have brown sugar for the Apple Crumble Cupcakes?

No brown sugar? No problem! You can make your own by mixing 1 cup of granulated sugar with 1 tablespoon of molasses. Or, honestly, just use all granulated sugar, though you'll miss that deeper, caramel-y note. I've done it when I'm in a pinch.

→ Why did my Apple Crumble Cupcakes sink in the middle?

Oh, that's a classic! Usually, it means they weren't fully baked, or the oven door was opened too soon. Make sure your oven temp is accurate, and always do the toothpick test in the very center. I've had many a sunken cupcake, you live and learn!

→ How long do Apple Crumble Cupcakes last?

Stored in an airtight container at room temperature, they're good for about 2-3 days. In the fridge, maybe up to 5 days, but the crumble softens. I usually eat them all before I even need to worry about storage, to be real!

→ Can I add nuts to the Apple Crumble Cupcakes crumble topping?

Absolutely! Chopped pecans or walnuts would be a fantastic addition to the crumble topping. I’ve added them before for extra crunch and a nutty flavor, and it worked beautifully. Just throw them in with the oats and flour mixture.

Rustic Apple Crumble Cupcakes: Fall Spiced Treats

Apple Crumble Cupcakes bring the comforting taste of fall to your kitchen. Warm spices, tender apples, and a crumbly topping make these a sweet, easy treat.

4.2 out of 5
(90 reviews)
Prep Time
25 Minutes
Cook Time
20 Minutes
Total Time
45 Minutes


Difficulty: Intermediate

Cuisine: American

Yield: 12 Servings

Dietary: Vegetarian

Published: Sun Dec 14 2025 at 04:26 PM

Last Updated: Thu Jan 08 2026 at 02:50 AM

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Ingredients

→ Cupcake Base

01 1 1/2 cups all-purpose flour
02 1 1/2 teaspoons baking powder
03 1/2 teaspoon baking soda
04 1/4 teaspoon salt
05 1/2 cup (1 stick) unsalted butter, softened
06 1/2 cup granulated sugar
07 2 large eggs, room temperature
08 1 teaspoon vanilla extract
09 1/2 cup milk

→ Apple Filling

10 2 medium apples (Granny Smith or Honeycrisp), peeled, cored, diced
11 1 tablespoon granulated sugar
12 1 tablespoon light brown sugar
13 1/2 teaspoon ground cinnamon
14 Pinch of ground nutmeg

→ Crumble Topping

15 1/2 cup all-purpose flour
16 1/4 cup rolled oats
17 1/4 cup packed light brown sugar
18 1/2 teaspoon ground cinnamon
19 3 tablespoons cold unsalted butter, cut into small pieces
20 Tiny pinch of salt

→ Flavor Boosters

21 Extra pinch of ground cardamom (optional, for filling or crumble)
22 Chopped pecans or walnuts (optional, for crumble)

Instructions

Step 01

First things first, get your oven preheating to 375°F (190°C) and line a 12-cup muffin tin with paper liners. Then, peel, core, and dice your apples into small, uniform pieces. I usually aim for about 1/4 to 1/2 inch cubes. This is where I always get a little messy, apple peels everywhere! Toss the diced apples in a medium bowl with 1 tablespoon of granulated sugar, 1 tablespoon of brown sugar, 1/2 teaspoon of cinnamon, and a pinch of nutmeg. Give it a good stir to coat them all. They’ll soften slightly while you work on the rest.

Step 02

In a separate small bowl, let’s make that glorious crumble. Combine 1/2 cup all-purpose flour, 1/4 cup rolled oats, 1/4 cup packed light brown sugar, 1/2 teaspoon ground cinnamon, and a tiny pinch of salt. Now, cut in 3 tablespoons of cold unsalted butter. You can use a pastry blender, two forks, or just your fingertips - I usually go with my fingers because it's quicker and I like the feel. Work it until the mixture resembles coarse crumbs. Don't overmix, you want those little buttery bits for crunch! Set this aside for a bit.

Step 03

In a large bowl, cream together 1/2 cup softened unsalted butter and 1/2 cup granulated sugar until light and fluffy. This is where the magic starts to happen, you can see it getting pale and airy! Beat in 2 large eggs, one at a time, making sure each is fully incorporated before adding the next. Don't worry if it looks a little curdled, it'll come together. Stir in 1 teaspoon of vanilla extract. In another bowl, whisk together 1 1/2 cups all-purpose flour, 1 1/2 teaspoons baking powder, 1/2 teaspoon baking soda, and 1/4 teaspoon salt. Add the dry ingredients to the wet ingredients in three additions, alternating with 1/2 cup milk, beginning and ending with the dry. Mix until just combined. Don't overmix, seriously! Lumps are okay.

Step 04

Divide about two-thirds of the cupcake batter evenly among the 12 lined muffin cups. Each cup will get a spoonful or two. Now, take your spiced apple mixture and spoon a generous tablespoon or so over the batter in each cup. You don’t need to be super neat, a little rustic charm is good! Gently press the apples down a bit into the batter. Then, dollop the remaining cupcake batter over the apples in each cup, spreading it carefully to cover. This creates a lovely apple layer in the middle. I sometimes get a bit messy here, but it’s fine, it bakes out!

Step 05

Finally, sprinkle your prepared crumble topping generously over each cupcake. Make sure every single one gets a good crown of that buttery, oat-y goodness. Don't be shy! Pop the muffin tin into your preheated oven. Bake for 18-22 minutes, or until a wooden skewer inserted into the center of a cupcake comes out clean, or with just a few moist crumbs. My oven runs hot, so I usually check at 18 minutes. The kitchen will smell absolutely incredible, like pure autumn heaven!

Step 06

Once they’re golden brown and baked through, carefully remove the muffin tin from the oven. Let the Apple Crumble Cupcakes cool in the tin for about 5 minutes before transferring them to a wire rack to cool completely. The smell of warm apples and cinnamon wafting through the house is just the best. I always sneak one when it's still warm, even though I know I should wait. They look so inviting, with that golden crumble on top and the peek of apple inside. Enjoy!

Notes

  1. Don't overmix the cupcake batter, or they'll be tough! I learned that the hard way.
  2. Store these Apple Crumble Cupcakes in an airtight container at room temp for up to 3 days. They also freeze beautifully.
  3. No fresh apples? Canned pie filling works in a pinch, just reduce the sugar a bit in the filling.
  4. A dollop of vanilla bean ice cream or a drizzle of caramel sauce takes these over the top.

Tools You'll Need

  • 12-cup muffin tin
  • paper liners
  • large mixing bowls
  • small mixing bowls
  • whisk
  • rubber spatula
  • pastry blender (optional)
  • cooling rack

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Dairy
  • Eggs
  • Gluten

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 300 Calories
  • Total Fat: 15g
  • Total Carbohydrate: 40g
  • Protein: 4g

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